Mando, the hood will shimmy and shake. As it does the hood will force the rubber down until it hits those screws. And as it shimmys and shakes some more, the screw head will eat into the glass.
You are a perfectionist, it shows. This will not happen for a long time if you never start and drive the car ( trailer queen ), but if you drive this for a while, it will go fairly quick.
I would pull the rubber bumpers and put "D" type molding down with 3M tape.
