Measuring with a micrometer is as much "art" as it is "science". It's easy to say, "Just mic it for size", but the fact is it IS difficult without some experience to measure the SAME PLACE twice and get the SAME READING!
A lot of it has to do with how much pressure one might be applying to the screw end of the mic. Or perhaps your holding the mic slightly off center or a bad angle. Being able to dupilcate your results is the key, measure it over and over until your comfortable with getting the reading "right" everytime.
It is actually pretty easy for a "new guy" to mis-measure a thousands of an inch off, that would be .001 Bigfoot mentioned a measurment as small as a .00025, now THATS REALLY TOUGH for a new guy to measure! The way you hold your left foot while you measure it could throw you off!
Practice for the "feel", THATS the art of it all.
I recently spent an "evening" with my crank shaft, literally in my living room watching TV and "measuring" and writing down the various readings. When I was done with the mic, I then moved on to Plasti Gauge (the poors man's micrometer). I measured the big end of the rod, the thickness of the bearing itself, the crank pin, I did the "math" and calculated the "clearance". So the plasti Gauge should pretty much match the "numbers". If it doesn't your math is off or SOMETHING is wrong.
Consider this: Even the BEST race teams and FACTORY race teams use Plasti Gauge to double check the math just before final assembly. If THEY do it, you can bet your ass I will do it!